Genetic Polymorphism of some Medicinal Plants Belonging to Brassicaceae Using Molecular Markers
Abstract
Exploitation of genetic variability is of major importance in basic genetic studies and in plant improvement programs. The Cruciferae (Brassicaceae) is the largest family of the Brassicales order. It is a natural family of major economic importance. The number of genera about 365 and the number of species about 3250, Mabberley (1997) and Judd et al. (1999) recorded 419 genera and 4130 species belonging to this family and is classified into 13 tribes. In Egypt, Teckholm (1974) recorded 61 genera and 106 species distributed in different habitat types. On the other hand, El-Hadidi and Fayed (1995) recorded 55
genera and 108 species for it.
Mustard plants or their oils can heal rheumatic pains and as emetic in cases of poisoning. It may be used as stimulant for the heart (Naim et al., 1984). Brassica are major oil crop and broccoli, cabbage and mustard are important part of human diet worldwide. In general, genetic improvement of crops can be accelerated when broad genetic diversity and the information of these genetic resources are available. The collection of these genetic resources and the assessment of genetic diversity within and between species should have high priority. Traditionally, markers based on morphological differences among individuals have been used to demonstrate the genetic variability, but with the development of electrophoretic techniques, the biochemical analysis become the cheapest and simplest methods that offer sufficient information to use in plant breeding and serve as a starting point for DNA-based studies (Popov et al., 2002). Moreover, the best molecular markers for genome mapping, marker assisted selection, phylogenetic studied, and crop conservation has low cost and labor requirements and high reliability is called inter simple sequence repeat (ISSR), has been available (Zietkiewicz et al., 1994). Microsatellites are very short (usually 10-20 base pair) stretches of DNA randomly and widely distributed along the genome and they can be analyzed efficiently by the polymerase chain reaction (PCR), using specific primers (forward and reverse) to their flanking regions. The variation in (PCR) product length is a function of the number of SSR units. Primers based on a repeat sequence, such as (CA)n, can be made with a degenerate 3'-anchor, such as (CA) 8 RG or (AGC) 6 TY (Tsumara et al., 1996; Nagaoka et al., 1997). ISSR markers were successfully used for estimating the genetic diversity in several crops, for instance barley (Afiah et al., 2007a) and canola (Afiah et al., 2007b; Afiah and Farag, 2008). In this study isozyme and ISSR were carried out on 11 ecotypes of the Cruciferae collected from different localities of Egypt and to assess the genetic diversity among them.
References
Abdel-Tawab, F. M., Eman M. Fahmy, Hoda M. El-demerdash, O. M. Saleh, H. Fotouh and Gh. A. Gad EL-Karim (2007). Molecular phylogenetic relationships of two genera of Labiatae family. Egypt. J. Genet. Cytol., 36: 325-339.
Afiah, S. A., A. Z. E. Abdelsalam, E. A. Kamel, A. E. Dowidar and S. M. Ahmed (2007a). Molecular genetic studies on canola crosses under Maryout conditions. 8th African Crop Sci. Society a Conf., El-Minia, Egypt, 27-31 Oct., 633-642.
Afiah, S. A., K. Z. Ahmed and Kh. A. Soliman (2007b). Somaclonal variation in bread wheat (Triticum aestivum L.). 4-RAPD fingerprinting of elite genotype under Siwa Oasis conditions. 8th African Crop Sci. Society Conf., El-Minia, Egypt.
Ahmed, A. M., M. E. El-Saied, Farida M. and A. A. Morsy (2003). Biochemical Genetic Fingerprinting of eight acacia species from Egypt. Desert Ins. Bull., 53: 217-244.
Badr, A. (1995). Electrophoretic studies of seed proteins in relation to chromosomal oriteria and relationships of some taxa of trifolium. Taxson, 44: 183-191.
Doyle, J. J. and J. L. Doyle (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bulletin, 19: 11-15.
Duarte, V. M. A., P. S. Garcia, A. B. E Garcia, J. R. Whitaker and C. T. Regalado (2007). Broccoli processing wastes as a source of peroxidase. Journal of Agricultural and Food Chemistry, 55: 10396-10404.
El-Hadidi, M. N. and A. A. Fayed (1995). (Eds): Materials from excursion flora of Egypt (EFE).
Geng, J. F., X. L. Hou, X.W. Zhang, Y. Cheng, Y. Li, Y. X. Yuan, W. S. Jiang, Y. P. Han and Q. Yao (2007). Construction of a genetic linkage map in non-heading Chinese cabbage (Brassica campestris) using a doubled haploid (DH) population. Journal of Nanjing Agricultural University, 30: 23-28.
Hassan, A. M. H. (2005). Identification of molecular marker for some morphological and biochemical characters in some medicinal plants unpublished M. Sc. Thesis, Ain Shams Univ., Fac. Agric.
Javidfar, F., V. Ripley, H. Zeinali, S. Abdmishani, A. A. S. Bushehri and R. T. Afshari (2007). Detection of molecular markers associated with linolenic acid content in spring oilseed rape (Brassica napus L). Agricultural Science Tabriz, 17: 47-56.
Jones C. J., K. J. Edwards, S. Castaglione, M. O. Winfield, F. Sale, C. Van de Wiel, G. Bredemeijer, M. Buiatti, E. Maestri, A. Malcevshi, N. Marmiroli, R. Aert, G. Volckaert, J. Rueda, R. Linacero, A. Vazquez and A. Karp (1997). Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol. Breed., 3: 381-390.
Judd, W. S., C. S. Campbell, E. A. Kellog and P. F. Stevens (1999): Plant Systematics. A Phylogenetic Approach Sinauer Associates, Inc. USA.
Kumar and Gupta (1985). Isozyme studies in Indian mustard (Brassica juncea L.). Theor. Appl. Genet., 70: 107-110.
Lagrimini, L. M. and S. Rothstein (1987). Tissue specificity of tobacco peroxidase isozymes and their induction by wounding and tobacco mosaic virus infection. Plant Physiology, 84: 438-442.
Liu, L. W., G. A. Liu, Y. Q. Gong, W. H. Dai, Y. Wang, F. M. Yu and Y. Y. Ren (2007). Evaluation of genetic purity of F1 hybrid seeds in cabbage with RAPD, ISSR, SRAP, and SSR markers. Hort. Science, 42: 724-727.
Liu, P. W. and G. S. Yang (2004). Analyses of the genetic diversity of resynthesized Brassica napus by RAPD and ISSR molecular markers. Acta Agronomica Sinica, 30: 1266-1273.
Mabberley, D. J. (1997). The plant-book, a portable dictionary of the vascular plants. Cambridge Univ. press.
Mara, D., M. Groppa, L. Tomaro and E. Marcelo (1999). Activity and expression of peroxidases from sunflower: Effect of development. Revista Brasileira de Fisiologia Vegetal, 11: 55-59.
Mark, R. H. and C. William (1989). Electrophoretic Band Patterns of Phospho glucoisomerase and Malate Dehydrogenase in the Prickly Pear Cactus (Cactaceae) from Southwestern Oklahoma. Proc. Okla. Acad. Sci., 69: 5-9.
Mukhlesur, R. M. and Y. Hirata (2005): Identification of different species and cultivars of Brassica by SDS-PAGE, isozyme and molecular marker. J. Plant Biotech., 7: 27-35.
Muminovic, J., A. Merz, A. E. Melchingeraa and T. Lubberstedt (2005). Genetic structure and diversity among radish varieties as inferred from AFLP and ISSR analyses. Journal of the American Society for Horticultural Science, 130: 79-87.
Naim, M. S., M. El-Shafey, H. Sharoubeem and A. El-Bayoumi (1984). Botany, Dar Al-Maaref, Cairo, Egypt, pp. 330.
Ozaki, Y., T. Tashiro and H. Okubo (2000). Use of allozyme variation for evaluating genetic purity in asparagus (Asparagus officinalis L.) cultivars. Journal of Horticultural Science and Biotechnology, 75: 105-110.
Pharmawati, M., G. Yan and P. M. Finnegan (2005). Molecular variation and fingerprinting of Leucadendron cultivars (proteaceae) by ISSR markers. Ann.Bot. (Lond), 7: 1163-1170.
Popov, V. N., O. I. U. Urbanovich and V. V. Kiricenko (2002). Studying genetic diversity in inbred sunflower lines by RAPD and isoenzyme analysis. Genetika, 38: 937-943.
Sabu, K. K., P. Padmesh and S. Seeni (2001). Intraspecific variation in active principle content and isozymes of Andrographis paniculata Nees (Kalmegh): a traditional hepatoprotective medicinal herb of India. J. Medicinal and Aromatic Plant Science, 23: 637-647
Samy, A. A, Z. A. Kasem and A. S. Khaled (2007). Somaclonal variation in bread wheat (Triticum asetivum L.).4-RAPD: Fingerprinting of elite genotype under Siwa Oasis conditios. 8th African Crop Sci. Society Conf., El-Minia, Egypt, 1-13 Oct., 2007.
Täckholm, V. (1974). Student’s Flora of Egypt, Ed: 2, Cairo, Cairo Univ.
Tso, S. C. and Y. R. Chen (1997): Isolation and characterization of a group III isozyme of acid phosphatase from rice plants. Bot. Bull. Acad. Sin., 38: 245-25.
Tsumura Y., K. Ohba and S. H. Strauss (1996). Diversity and inheritance of inter-simple sequence repeat polymorphisms in Douglas-fir (Pseudotsuga menziesii) and sugi (Cryptomeria japonica). Theor. Appl. Genet., 92: 40-45.
Welinder, K. G. (1992). Superfamily of plant, fungal and bacterial peroxidases. Curr. Opin. Struct. Biol., 2: 388-393.
Wendle, J. F. and N. F. Weeden (1989). Visualization and interpretation of plant isozymes. Isozymes in Plant Biology.Slotis, DE and Slotis P.S (Eds).
Zietkiewicz E., A. Rafalski and D. Labuda (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, 20: 176-183.