USE OF RAPD AND ISSR MARKERS FOR THE IDENTIFICATION OF EGYPTIAN HENBANE (Hyoscyamus muticus L.) GENOTYPES
Abstract
Medicinal plants have acquired increasing significance over the last few years, not only because their healing ability, but also due to their minor side effects comparing to the chemical medicine. Worldwide, 35000 plant species are used for medicinal purposes but only 90 species are considered in the most important industrial medicines. In developing countries traditional medicine is spread because natural remedies are cheaper than chemical medicine and are often the only medicine available in the remote rural area. Besides serving medicinal functions, medicinal plants in developing countries have an important economic role because they have 90% of the earth genetic diversity exists in the developing countries.
Family Solanaceae is one of the most intriguing plant families in the world not only because it is one of the largest families in plant kingdom with more than 3,000 species. Also, because it includes species which are essential for life such as Hyoscyamus muticus (an important medicinal plant of the Solanaceous family).
The Solanaceae is known for possessing a diverse range of alkaloidal glucosides, or simply alkaloids. One of the most important groups of these compounds is called the tropane alkaloids. Hyoscyamus plants have been known from ancient time as a remedy for various diseases, and serve today as a source of their pharmaceutically active constituents; the tropane alkaloids. The medicinal importance of scopolamine, hyoscyamine and atropine is illustrated by their presence in the list of the ten substances of plant origin most used as drugs in the USA in the 1973.
Random amplified polymorphic DNA (RAPD) markers and inter - simple sequence repeats (ISSR) markers are two molecular approaches that have been used to detect variation among plants. Each method has been used extensively to identify and determine relationships at the species and cultivar levels (Rajaseger et al., 1997; Raina et al., 2001; Martins et al., 2003). These methods are widely applicable because they are rapid, inexpensive, simple to perform, do not
require prior knowledge of DNA sequence and require very little starting DNA template (Esselman et al., 1999). The ISSR method has been reported to produce more complex marker patterns than the RAPD approach (Parsons et al.,
1997). In addition, ISSR markers are more reproducible than RAPD markers, because ISSR primers, designed to anneal to a micro-satellite sequence, are longer than RAPD primers, allowing higher annealing temperatures to be used (Goulao and Oliveira, 2001).
References
Abdel-Tawab, F. M., E. M. Fahmy, A. Bahieldin, A. A. Mohamed, H. T. Mahfouz, H. F. Eissa and O. Moseilhy (2003). Marker-assisted selection for drought tolerance in Egyptian bread wheat (Triticum aestivum L.). Egypt. J. Genet. Cytol., 31: 43-63.
Abdel-Tawab, F. M., E. M. Fahmy, M. A.Rashed, Gh. A. Gad El-Karim, S. H. Abdel-Aziz and S. E. Ibrahim (2002). Development of molecular markers for salt and drought toler- ance in maize (Zea mays L.). Egypt. J. Genet. Cytol., 32: 355-
Abdel-Tawab, F. M., M. A. Rashed, A.Dhindsa, A. Bahieldin and A. Abo Doma (1998).Molecular markers for salt tolerance in Sorghum bicolor. International Congress on Molecular Genetics, 21-26 Feb., Cairo, Egypt.
Dellaporta, S. L., J. Wood and J. B. Hicks (1983). A plant DNA preparation version II, Plant Mol. Biol. Rep.,
: 19-21.
Esselman, E. J., L. Jianqiang, D. J. Crawford, J. L. Windus, A. D. Wolfe (1999). Clonal diversity in the rare Calamagrostis porteri ssp. Insperata (Poaceae): comparative results for allozymes and random amplified polymorphic DNA (RAPD) and inter simple sequence repeat (ISSR) markers. Molecular Ecology, 8: 443-451.
Fahmy, E. M., N. M. Abd-El-Gawad, I. H. El-Geddawy, O. M. Saleh and N. M. El-Azab (2008). Develop- ment of RAPD and ISSR markers for drought tolerance in sugarcane (Saccharum officinarum L.). Egypt. J. Genet. Cytol., 37: 1-15.
Goulao, L. and C. M. Oliveira (2001). Molecular characterization of cul- tivars of apple (Malus x domestica Borkh) using microsatellite (SSR and ISSR) markers. Euphytica, 122: 81-89.
Iruela, M., J. Rubio and J. J. Cubera (2002). Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theor. Appl. Genet., 104:643-651.
Jaccard, P. (1908). Nouvelles rechearches sur la distribution lorale. Bull. Soc. Vaud. Sci. Nat., 44: 223-270.
Joshi, S. P., V. S. Gupta and R. K. Agarwal (2000). Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. Theor. Appl. Genet., 100: 1311-1320.
Kochieva, E. Z., N. N. Ryzhova, I. A. Khrapalova and V. A. Pukhalskyi (2002). Using RAPD for estima- ting genetic polymorphism in and phylogenetic relationships among species of the genus Lycopersicon (Tourn.). Mill. Russian J. Genetics, 38: 1104-1108.
Martin, J. P. and S. M. D. Yelemo (2000).Genetic relationships among spe- cies of the genus Diplotaxis (Bras- sicaceae) using inter simple sequence repeat markers. Theor. Appl. Genet., 101: 1234-1241.
Martins, M., R. Tenreiro and M. M. Oliveira (2003). Genetic related- ness of Portuguese almond culti- vars assessed by RAPD and ISSR markers. Plant Cell Reports, 22:71-78.
Nagaoka, T. and Y. Ogihara (1997). Ap- plicability of inter-simple sequence repeat polymorphisms in wheat for
use as DNA markers in compari- son to RFLP and RAPD markers. Theor. Appl. Genet, 94: 597-602.
Parsons, B. J, H. J. Newbury, M. T. Jackson and B. V. Ford-Lloyd (1997). Contrasting genetic diver- sity relationships are revealed in rice (Oryza sativa L.) using different marker types. Mol. Breed., 3: 115-125.
Petros, Y., A. Merker and H. Zeleke (2007). Analysis of genetic diver- sity of Guizotia abyssinica from Ethiopia using inter simple se- quence repeat markers. Hereditas, 144: 18-24.
Prevost, A. and M. J. Wilkinson (1999). A new system of comparing PCR primers applied to ISSR finger- printing of potato cultivars. Theor. Appl. Genet., 98: 107-112.
Raina, S. N., V. Rani, T. Kojima, Y. Ogihara, K. P. Singh and R. M. Devarumath (2001). RAPD and ISSR fingerprints as useful genetic markers for analysis of genetic diversity, varietals identification, and phylogenetic relationships in peanut (Arachis hypogaea) culti- vars and wild species. Genome, 44: 763-772.
Rajaseger, G., H. T. W. Tan, I. M. Turner and P. P. Kumar (1997). Analysis of genetic diversity among Ixora cultivars (Rubiaceae) using ran- dom amplified polymorphic DNA. Annals of Botany, 80: 355-361.
Ratnaparkhe, M. B., M. Tekeoglu and J. Muehlbaure (1998). Inter-simple sequence repeats (ISSR) polymor- phisms are useful for finding markers associated with disease resistance gene clusters. Theor. Appl. Genet., 97: 515-519.
Reddy, M. P., N. Sarla and E. A. Siddiq (2002). Fourth International Rice Genetics Symposium, IRRI, Philippines, Abstract, pp. 212.
Rohlf, F. J. (2000). NTSYS-PC: Numeri- cal taxonomy and multivariate analysis system. Version 2.02 Exeter Software, Setauket, N.Y.
Singh A. K., M. Singh, A. K. Singh, R. Singh, K. Kumar and G. Kalloo (2006). Genetic diversity within in the genus Solanum (Solanaceae) as revealed by RAPD markers. Current Science, 90: 711-716.
Votava, E. J., J. B. Baral and P. W. Bosland (2005). Genetic diversity of Chile (Capsicum Annuum Var. Annuum L.) Landraces from Northern New Mexico, Colorado, and Mexico. 59: 8-17.
Williams, J. G. K., A. R. Kubelik, K. J. A. Rafalski and S. V. Tingey (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Research, 18: 6531-6535.
Zietkiewicz, E., A. Rafalski, and D. Labuda (1994). Genome finger- printing by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics,
: 176-183.