IDENTIFICATION OF MALE SPECIFIC MOLECULAR MARKERS IN DATE PALM SEWI CULTIVAR

Authors

  • A. AGEEZ Department of Protein and Nucleic Acid Chemistry, Agricultural Genetic Engineering Research Institute, Agricultural Research Center, Giza, Egyp
  • E. A. MADBOLY The Central Laboratory for Date Palm Researches-Agriculture Research Center, Giza, Egypt

Abstract

The date palm (Phoenix dactylifera L.) is a monocotyledoneus woody by Giza governorate that cultivate 0.525 millions tree. (Ministry of Agriculture, perennial tree belongs to the Arecaceae family, which comprises 200 genera and more than 2500 species (McCurrach, 2009).
In the date palm, the dioecious 1960). Date-palm (2n=36), cultivated mainly in North Africa and Middle East, has major economic, social and environmental importance. Date-palms constitute the principal financial resource and food source of oasis growers, and it contributes to the development of subjacent cultures (alfalfa, fig trees, pepper, tomato, saffron, etc.).
In Egypt, date palm trees are classified according to their fleshiness into three classes. The first class is the soft date such as Zaghloul, Samani, and Hayany. The second class is the semidry date such as Sewi, Aglany and Amry. The third class is the dry date like Sakoty and Malkaby. Sewi cultivar, a semi dry date palm, is considered one of the most important commodity items for export in Egypt. It is stored and processed throughout the year. The number of fruitful Sewi female palms in Egypt is 1.834 million. El-Wadi El-Gadid governorate cultivates the biggest number in Egypt, 0.661 million, followed mode (separate male and female individuals) and the late initial reproductive age (5-10 years) are major practical constraints for genetic improvement. Early selection on young seedlings could enhance breeding programmes and generate experimental male and female genetic stocks, but no easy robust cytogenetic protocol exists for sex determination in an immature date palm (Siljak-Yakovlev et al., 1996). Genotype identification and cultivar identification, based on morphological character of date palm, is an intricate empirical exercise (Al-Khalifha et al., 2011).
The development of the PCR-based fingerprinting techniques such as randomly amplified polymorphic DNAs (RAPDs) (Welsh and McClelland, 1990; Williams et al., 1990), amplified fragment length polymorphisms (AFLPs) (Lin and Kuo, 1995) and simple sequence repeats (SSRs) (Powell et al., 1996) has accelerated the detection of distinct markers in plant genomes. RAPD method is straightforward and does not require previous genetic knowledge of the target organism. Furthermore, it is very quick and convenient to perform. The RAPD technique has been employed to develop sex-linked markers in Silene latifolia (Zhang et al., 1998), P. longum (Banerjee et al., 1999), Pistacia vera (Hormaza et al., 1994), Salix viminalis (Alstrom-Rapaport et al., 1998), Cannabis sativa (Mandolino et al., 1999) and Actinidia species (Gill et al., 1998). To address the problem of sensitivity, it has been suggested that RAPD marker should be converted to sequence characterized amplified region (SCAR) marker based on their DNA sequence (Paran and Michelmore, 1993). The SCAR marker is sequence-specific and can be used to amplify single bands corresponding to single genetic loci. The conversion of RAPD markers to sex-linked SCAR markers et al., was performed in Salix viminalis (Gunter et al., 2003), in Actinidia chinensis (Gill et al., 1998; Geoffrey et al., 1995) and in Papaya (Urasaki et al., 2002).
The aims of this study are to 1identify and discriminate between male and female date palm trees via vegetative virtual external morphological characteristics. 2-identify of male-associated SCAR markers in date palm in order to help for plant grower, in selecting the favorable male plant in their programs in fast cost-effective way.

References

Al-Dous, E. K., B. George, M. E. Al-Mahmoud, M. Y. Al-Jaber, H. Wang, Y. M. Salameh,E. K. Al-Azwani, S. Chaluvadi, A. C. Pontaroli, J. DeBarry, V. Arondel, J. Ohlrogge, I. J. Saie, K. M. Suliman-Elmeer, J. L. Bennetzen, P. R. Kruegger and J. A. Malek (2011). De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nat Biotechnol. May 29, 29: 521-527.

Alghool, M. and M. Benismail (2007). Vegetative characters and fruit chemical analysis of date palms under Rain Fed conditions. The Fourth Symposium on Date Palm in Saudi Arabia, King Faisal University, Al-Hassa, 5-8 May 2007. Acta Horti. Cult., 736: 136-145.

Al-Khalifha, N. S., E. Askari and A. Shanavas-Khan (2011). Molecular and Morphological identification of some elite varieties of date palms in Saudi Arabia. The First Scientific Conference for The Development of The Date Palm and Dates Sector In The Arab World, King of Abdul-Aziz City for Science and Technology, 4-7 December 2011, Riyadh, Saudi Arabia.

Alstrom-Rapaport, C., M. Lascoux, Y. C. Wang, G. Roberts and G. A. Tuskan (1998). Identification of a RAPD marker linked to sex determination in the basket willow (Salix viminalis L.). Journal of Heredity, 89: 44-49.

Association of Official Agriculture Chemists (1980). Official Methods of analysis. A.O.A.C. 16th Ed. Published by AOAC. Washington, DC, (USA) Chapter 4.

Banerjee, N. S., P. Manoj and M. R. Das (1999). Male sex associated RAPD markers in Piper longum L. Current Science, 77: 693-695.

Cottenie, A., M. Verloo, L. Kiekens, G. Velghe and R. Camerlynck (1982). Chemical analysis of plant and soils. Laboratory of Analytical and Agrochemistry, State University of Gent., Belgium, 100-129.

Geoffrey, G., F. Lena and H. Catherine (1995). Development of sex-specific PCR markers in Actinidia. Plant genome IV conference. San Diego, CA. USA, pp. 250.

Gill, G. P., C. F. Harvey, R. C. Gardner and I. G. Fraser (1998). Development of sex-linked PCR markers for gender identification in Actinidia. Theor. Appl. Genet., 97: 439-445.

Gunter, L. E., G. T. Roberts, K. Lee, F. W. Larimer and G. A. Tuskan (2003). The development of two flanking SCAR markers linked to a Sex determination locus in Salix viminalis L. Journal of Heredity, 94: 185-189.

Hormaza, J. I., L. Dollo and V. S. Polito (1994). Identification of a RAPD marker linked to sex determination in Pistacia vera using bulked segregant analysis. Theor, Appl. Genet., 89: 9-13.

Hucker, T. and G. Catraux (1980). Phosphorus in sewage sludge and animal waste slurries. D. eidle Publishing company, Dordrecht/ Holland, London/UK. 91-132.

Lin, J. J. and J. Kuo (1995). AFLP: A novel PCR-based assay for plant and bacterial DNA fingerprinting. Focus, 17: 70-71

Mandolino, G., A. Carboni, S. Forapani, V. Faeti and P. Ranalli (1999). Identification of DNA markers linked to the male sex in dioecious hemp (Cannabis sativa L.). Theor. Appl. Genet., 98: 86-92.

McCurrach, J. C. (1960). Palms of the world. Harper and Brothers, New York. Ministry of Agriculture, ARE (2009). Acreage and total production of Agriculture Crop in ARE, Bull. Econ. and Statistics.

Mohebi, A. H. (2007). Standardization of Leaf Sampling Technique for Leaf Analysis in Date Palm CV. Sayer. The Fourth Symposium on Date Palm in Saudi Arabia, King Faisal University, Al-Hassa, 5-8 May 2007. Acta. Horti. Cult., 736: 104-115.

Paran, I. and R. W. Michelmore (1993). Development of reliable PCR based markers linked to downy mildew resistance in lettuce. Theor. Appl. Genet., 85: 985-993

Powell, W., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey and A. Rafalski (1996). The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed., 2: 225-238.

Sambrook, J., E. Fritsch and T. Maniatis (2001). Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY). Volume 1, third edition 1:116-118.

Siljak-Yakovlev, S., M. Cerbah, A. Sarr, S. Benmalek, N. Bounaga, T. Coba de la Pena and S. Brown (1996). Chromosomal sex determination and hetero-chromatin structure in date palm. Sexual Plant Reproduction, 9: 127-132.

Snedecor, G. W. and W. G. Cochran (1972). Statistical Method 6th. The Iowa State University Press, Ames., Iowa, USA.

Urasaki, N., M. Tokumoto, K. Tarora, Y. Ban, T. Kayano, H. Tanaka, H. Oku, I. Chinen and R. Terauchi (2002). A male hermaphrodite specific RAPD marker for Papaya. Theor. Appl. Genet., 104: 281-285.

Welsh, J. and M. McClelland, (1990). Finger printing genomes using PCR with arbitrary primers. Nucleic Acids Research, 18: 7218-7228.

Williams, J. K., A. R. Kubelik, K. J. Livak, J. A. Rafalski and S. V. Tingey, (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18: 6231-6235.

Zhang, Y. H., V. DiStilio, F. Rehman, A. Tucker, D. Mulcahy and R. Kesseli (1998). Y-chromosome specific markers and the evolution of dioecy in the genus Silene. Genome, 41: 141-147.

Downloads

Published

2016-01-12

Issue

Section

Articles