GENETIC VARIATION BETWEEN TWO ECOTYPES OF EGYPTIAN CLOVER BY ISSR TECHNIQUE
Abstract
The ISSR markers have been used in order to determine genetic variation and relationship between two clover ecotypes. Six primers for ISSR-PCR technique and succeeded reliable amplicons for different types of Egyptian clover ecotypes. The results revealed polymorphisms level re-vealed by ISSR primers. HB-10 ISSR-primer was better than of the rest ISSR primers in polymorphic 100%. The Fahl monocut ecotype had 29 present bands, 2 absent bands in 31 total bands; also Fahl have two unique bands. The multicut ecotype Gemmiza 1, Giza 6 and Serw1 were given 20 present, 11 absent; 21 present and 10 absent and 23 present and 11 absent respectively. The three unique bands were appeared in two ecotypes. Fahl was given two with HB-11 and HB-13; the Serw multicut cultivar had one unique bands with HB-08. Similarity indices among the four Egyptian clover cultivars based on ISSR analysis was estimated the highest value was appeared between Fahl and Gemmiza 1 as well as Giza 6 and Serw 1 followed by Fahl and Serw 1. The lowest similarity value was appeared between Gemmiza 1 and Serw 1 followed by Gemmiza 1 and Giza 6.References
Abd El-Naby, Zeinab M., E. M. Zayed and S. S. M. Abo-Feteih (2012). Biochemical and molecular differ-ences between Egyptian clover hybrids. Egypt. J. Biotechnol., 41: 104-118.
Abd El-Naby, Zeinab M. and S. S. M. Abo-Feteih (2012). Inter varietal Hybrids between Multi and Mono-cuts Egyptian clover on Inbreeding depression and fertility characters.
Abd El-Naby, Zeinab M., S. S. Abou-Feteih and H. Sakr (2009). Forage yield and seed setting of seven populations of Egyptian clover. Egypt. J. Plant Breed., 13: 269-279.
Abd El-Zaher, M. A., M. A. Mustafa and A. Badr (2006). Genetic diversity among ocimum populations in Egypt as reflected by morphologi-cal, seed protein and isozymes polymorphism. International J. Botany, 2: 261-269.
Abo-Feteih, S. S. M., Zeinab M. Abd El-Naby, M. M. Tarrad and Wafaa M. Sharawy (2010). Performance of (F1, F2 and BC) generations of inter varietal hybrids between multi and Mono-cuts Egyptian clover, 1-Agronomical traits and hybrid vig-or. Egypt. J. Plant Breed., 14: 119-130.
Anna, M. P., M. Hirsikorpi, T. Kämäräinen, L. Jaakola and A. Hohrola (2001). DNA isolation methods for medicinal and aromatic plants. Plant Mol. Biol. Rep., 19: 273.
Beckmann, J. S. and M. Soller (1990). Toward a unified approach to genetic mapping of eukaryotes based on sequence agged micro-satellite sites. Biotechnology, 8: 930-932.
Carlos, F., I. Barbas, D. R. Burton, J. K. Scott and G. J. Silverman (2001). Quantitation of DNA and RNA. Adapted from “General Proce-dures,” Appendix 3, in Phage Display, by Carlos F. Barbas III, Dennis R. Burton, Jamie K. Scott, and Gregg J. Silverman. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
FAO (2003). Strategy of Agricultural Development in Egypt Up To 2017. MOA. May 2003, Cairo, Egypt (In Arabic).
FAO (2010). Valuing Rangelands for the Ecosystem and Livelihood Ser-vices. Thirtieth FAO Regional Conference for the Near East. Khartoum, the Republic of the Sudan, 4-8 December 2010. Pub. NERC/10/INF/6 December 2010.
FAO (2012). Country Pasture/Forage Resource Profile.
Fernandez, M. E, A. M. Figueiras and C. Benito (2002). The use of ISSR and RAPD markers for detecting DNA polymorphism. Theor. Appl. Genet., 104: 845-851.
Greene, S. L., M. V. Gritsenko and G. Emark (2004). Relating morpho-logic and RAPD marker variation to collection site environment in wild population of red clover (Trifolium pratense) Genet. Re-source Crop Evol., 51: 643-653.
Lagercrantz, U., H. Ellegren and L. Andersson (1993). The abundance of various polymorphic microsatel-lite motifs differs between plant and vertebrates. Nucleic Acids Res., 21: 1111-1115.
Muminovic, J., A. E. Melchinger and T. Lubberstedt (2004). Prospect form celeriac (Apium graveolens Var. rapaceum) improvement by using genetic resources of Apium, as determined by AFLP marker and morphological characterization. Plant Genetic Resource, 2, 189-198.
Powell, W., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey and A. Rafalski (1996). The compari-son of RFLP, RAPD, AFLP and SSR (microsatellites) marker for germplasm analysis. Mol. Breed., 2: 225-238.
Soliman, M. I., E. M. Zayed and G. A. Ramadan (2010). Cytological comparison of two cultivars of Egyptian clover (Trifolium alexandrinum L). Range Mgmt. & Agroforestry, 31: 7-10.
Tarrad, M. M. and E. M. Zayed (2009). Morphological, biochemical and molecular characterization of Egyptian clover (Trifolium alex-andrinum L.) cultivars. Range Mgmt & Agroforestry, 30: 115-121.
Tautz, D. and M. Renz (1984). Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res., 12: 4127-4138.
Ulloa, O., F. Ortega and H. Campos (2003). Analysis of genetic diver-sity in red clover (Trifolium pratense L.) breeding populations as revealed by RAPD genetic markers. Genome, 46: 529-535.
Zayed, E. M. (2013). Applications of bio-technology on Egyptian clover [(BERSEEM) (Trifolium alexandrinum L.)] International Journal of Agricultural Science and Research (IJASR). 3: 99-120
Zayed, E. M., Soliman Magda I., G. A. Ramadan and M. M. Tarrad (2010). Molecular characterization of two cultivars of Egyptian clover (Trifolium alexandrinum L.). Range Mgmt. & Agroforestry, 31: 140-143.
Zietkiewicz, E., A. Rafalski and D. Labuda (1994). Genome finger-printing by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, 20: 176-183.